SUIT-032 NADH mt D078: Difference between revisions
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== Compare SUIT protocols == | == Compare SUIT protocols == | ||
:::* [[SUIT- | :::* [[SUIT-006 NADH mt D084]]: Similar protocol with uncoupler titrations and ET state evaluation. | ||
:::* [[SUIT-033 NADH mt D081]]: Protocol for simultaneous determination of O<sub><small>2</small></sub> flux and NADH autofluorescence in isolated mitochondria, allowing for calibration of the NAD redox ratios with samples that contain residual endogenous substrates. Additional titration of low concentration of ADP (0.1 ฮผM) for depletion of endogenous substrates and calibration of fully reduced NAD, allowing for cross-calibration with SUIT-032 NADH mt D078. | :::* [[SUIT-033 NADH mt D081]]: Protocol for simultaneous determination of O<sub><small>2</small></sub> flux and NADH autofluorescence in isolated mitochondria, allowing for calibration of the NAD redox ratios with samples that contain residual endogenous substrates. Additional titration of low concentration of ADP (0.1 ฮผM) for depletion of endogenous substrates and calibration of fully reduced NAD, allowing for cross-calibration with SUIT-032 NADH mt D078. | ||
:::* [[SUIT-032 O2 mt D109]]: Control protocol for respiration only, allowing for cytochrome ''c'' test. | :::* [[SUIT-032 O2 mt D109]]: Control protocol for respiration only, allowing for cytochrome ''c'' test. |
Revision as of 11:38, 2 January 2024
Description
Reference: A: protocol for simultaneous determination of O2 flux and NADH autofluorescence in mitochondrial preparations (isolated mitochondria, tissue homogenate and permeabilized cells)- SUIT-006
SUIT number: D078_File:1mt;1PGM;2D;3Anox;4Myx;5Reox.png
O2k-Application: NADH
Communicated by Grings M, Cardoso Luiza HD (last update 2023-12-21)
Representative traces
File:SUIT-032 NADH mt D078 O2.png File:SUIT-032 NADH mt D078.png
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
mt | REN | mt | ||
1PGM | PGML(n) | N | CI | 1PGM
|
2D | PGMP | N | CI | 1PGM;2D
|
3Anox | N | CI | 1PGM;2D;3Anox | |
4Myx | N | CI | 1PGM;2D;3Anox;4Myx
| |
5Reox | ROX | 1PGM;2D;3Anox;4Myx;5Reox |
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- Coupling control
- Pathway control
- ยป Electron transfer pathway
- ยป Fatty acid oxidation pathway control state, F
- ยป NADH electron transfer-pathway state, N
- ยป Succinate pathway control state, S
- ยป NS-pathway control state, NS
- ยป Glycerophosphate pathway control state, Gp
- ยป Complex IV single step, CIV
- ยป Anaplerotic pathway control state
- Pathway control
- Main fuel substrates
- ยป Glutamate, G
- ยป Glycerophosphate, Gp
- ยป Malate, M
- ยป Octanoylcarnitine, Oct
- ยป Pyruvate, P
- ยป Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- SUIT-032 NADH mt D078 in combination with SUIT-033 NADH mt D081 provides NAD redox ratios in LEAK and OXPHOS states, measured simultaneously with respiration.
- + Reasonable duration of the experiment.
- + H2 gas from Oxia or N2/argon can be used to decrease O2 concentration to obtain anoxia faster.
- - Fully oxidized NAD can only be obtained with the combination with SUIT-033 NADH mt D081 or with samples in which endogenous substrates are absent.
- - Careful washing is required after the experiment to avoid carry-over of uncoupler and inhibitors. The addition of liver homogenate is recommended in the washing protocol to bind strong inhibitors.
- - The concentration of the oxidized and reduced NAD fraction cannot be determined.
- - Omy concentration has to be determined if used. Higher concentrations of Omy may inhibit the ET state.
- - Antimycin A and CCCP cannot be used due to the high chemical background effect on fluorescence.
- - Cytochrome c test cannot be performed during the protocol as it affects fluorescence. Cytochrome c test can be performed in the following protocol: SUIT-032 O2 mt D109.
- After myxothyazol titration, this protocol can be extended with the Complex IV assay.
Compare SUIT protocols
- SUIT-006 NADH mt D084: Similar protocol with uncoupler titrations and ET state evaluation.
- SUIT-033 NADH mt D081: Protocol for simultaneous determination of O2 flux and NADH autofluorescence in isolated mitochondria, allowing for calibration of the NAD redox ratios with samples that contain residual endogenous substrates. Additional titration of low concentration of ADP (0.1 ฮผM) for depletion of endogenous substrates and calibration of fully reduced NAD, allowing for cross-calibration with SUIT-032 NADH mt D078.
- SUIT-032 O2 mt D109: Control protocol for respiration only, allowing for cytochrome c test.
Chemicals and syringes
Step | Chemical(s) and link(s) | Comments |
---|---|---|
1PGM | Pyruvate (P), Glutamate (G), and Malate (M) | |
2D | ADP (D) | |
3Anox | The O2 concentration in the O2k-chamber can be decreased by N2 or H2 injection to reach faster anoxia, see: Setting the oxygen concentration. | |
4Myx | Myxothiazol | We do not recommend the use of any other inhibitor of complex III, like Antimycin A (Ama), due to the chemical background effect on fluorescence. |
5Reox | Reoxygenation can be performed by opening the chamber, see: Open chamber. |
- Suggested stock concentrations are shown in the specific DL-Protocol.