Difference between revisions of "SUIT-007 O2 ce-pce D030"
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|SUIT number=D030_ce1;1Dig;1G;2D;2c;3M;4U;5Ama | |SUIT number=D030_ce1;1Dig;1G;2D;2c;3M;4U;5Ama | ||
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::: [[MitoPedia: SUIT]] | ::: '''[[MitoPedia: SUIT]]''' | ||
::: '''[[Categories of SUIT protocols |SUIT-category]]:''' N(GM) | ::: '''[[Categories of SUIT protocols |SUIT-category]]:''' N(GM) | ||
::: '''[[SUIT protocol pattern]]:''' diametral ce1;1Dig;1G;2D;2c;3M;4U;5Ama | ::: '''[[SUIT protocol pattern]]:''' diametral ce1;1Dig;1G;2D;2c;3M;4U;5Ama |
Revision as of 11:11, 6 March 2019
Description
Abbreviation: N(GM)
Reference: A pce: permeabilized cells - SUIT-007
SUIT number: D030_ce1;1Dig;1G;2D;2c;3M;4U;5Ama
O2k-Application: O2
- MitoPedia: SUIT
- SUIT-category: N(GM)
- SUIT protocol pattern: diametral ce1;1Dig;1G;2D;2c;3M;4U;5Ama
- SUIT finder: Glutamate anaplerotic pathway
The SUIT-007 O2 pce D030 is focused on the glutamate anaplerotic pathway. If glutamate dehydrogenase is present in the sample, when glutamate alone is added, it will be converted to α-ketoglutarate in an anaplerotic reaction, supporting respiration. After malate is added, it is possible to analyse the NADH Electron transfer-pathway state with glutamate and malate as substrates in the OXPHOS and ET coupling control states.
Communicated by Cardoso LH, Komlodi T and Gnaiger E (last update 2019-02-20)
Steps and respiratory states
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
ce1 | ROUTINE | ce1
| ||
1Dig | REN | ce1;1Dig
|
Step | State | Pathway | Q-junction | Comment - Events (E) and Marks (M) |
---|---|---|---|---|
1G | GL | (N) | CI | 1G
|
2D | GP | (N) | CI | 1G;2D
|
2c | GcP | (N) | CI | 1G;2D;2c
|
3M | GMP | N | CI | 1G;2D;2c;3M
|
4U | GME | N | CI | 1G;2D;2c;3M;4U
|
5Ama | ROX | 1G;2D;2c;3M;4U;5Ama
|
- Bioblast links: SUIT protocols - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Coupling control
- Pathway control
- Main fuel substrates
- » Glutamate, G
- » Glycerophosphate, Gp
- » Malate, M
- » Octanoylcarnitine, Oct
- » Pyruvate, P
- » Succinate, S
- Main fuel substrates
- Glossary
Strengths and limitations
- Protocol focused on analysis of glutamate anaplerotic pathway/glutaminolysis in permeabilized cells (pce).
- + The use of glutamate alone allows to analyse the glutamate anaplerotic pathway control state.
- + Short duration of the experiment.
- + Glutamate is easier to prepare compared to pyruvate.
- + CIV activity can be measured after this protocol.
- - Analysis of N-OXPHOS capacity (instead of NS-OXPHOS capacity) does not provide the best estimate of maximum mitochondrial respiratory capacity.
- - This protocol does not address questions regarding the convergence of pathways at the Q-junction.
- - Careful washing is required after the experiment to avoid carry-over of inhibitors and uncoupler.
Compare SUIT protocols
- SUIT-006: Coupling control protocol, can be performed with GM.
References
MitoPedia concepts: SUIT protocol, SUIT A, Find
MitoPedia methods:
Respirometry