Difference between revisions of "Gnaiger 2021 Bioenerg Commun"
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[[File:Template NextGen-O2k.jpg|left|400px|link=NextGen-O2k]] | [[File:Template NextGen-O2k.jpg|left|400px|link=NextGen-O2k]] | ||
:::: Supported by project NextGen-O2k which has received funding from the European Unionâs Horizon 2020 research and innovation programme under grant agreement No. 859770. | :::: Supported by project NextGen-O2k which has received funding from the European Unionâs Horizon 2020 research and innovation programme under grant agreement No. 859770. | ||
== Further notes == | |||
::::* â''For most published papers, âpublicationâ often just signifies âfinal registration into oblivionâ. .. Only 73 of the many thousands of articles ever published by the 187 BMC-affiliated journals had over 10 000 accesses through their journal Web sites in the last year''â (Young et al 2008). | |||
::::::* Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2:112 pp. https://doi.org/10.26124/bec:2020-0002 - has been accessed '''92 758 times ([[Gnaiger_2020_BEC_MitoPathways |accessed 2022-01-01]])''' | |||
::::::* Gnaiger E et al â MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. https://doi.org/10.26124/bec:2020-0001.v1 - has been accessed '''35 423 times ([[BEC_2020.1_doi10.26124bec2020-0001.v1 |accessed 2022-01-01]])''' | |||
::::* The empire of Pergamon Press was built by Robert Maxwell and made him a millionaire. "In 1991, to finance his impending purchase of the New York Daily News, Maxwell sold Pergamon to its quiet Dutch competitor Elsevier for ÂŁ440m (ÂŁ919m today)" (Buranyi 2017 Guardian). | |||
::::* ''The opportunity is to introduce, demand, and reward a level of rigor and robustness in designing, conducting, reporting, interpreting, validating, and disseminating research that is currently lacking from many areas of biomedical research'' ([[Begley 2015 Circ Res]]). | |||
::::* ''Over the recent years, there has been an increasing recognition of the weaknesses that pervade our current system of basic and preclinical research. This has been highlighted empirically in preclinical research by the inability to replicate the majority of findings presented in high-profile journals. The estimates for irreproducibility based on these empirical observations range from 75 % to 90 %. These estimates fit remarkably well with estimates of 85 % for the proportion of biomedical research that is wasted at-large'' ([[Begley 2015 Circ Res]]). | |||
::::* ''The number of publishing scientists has grown over the years, with over 15 million scientists publishing â„1 article that was indexed in Scopus in the period 1996â2011. Biomedical research is the most prolific scientific field in this regard. It is practically impossible for even the most knowledgeable expert to maintain direct knowledge of the work done by so many other scientists, even when it comes to his/her core discipline of interest'' ([[Begley 2015 Circ Res]]). | |||
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Revision as of 22:19, 1 January 2022
Gnaiger E (2021) Beyond counting papers â a mission and vision for scientific publication. Bioenerg Commun 2021.5. https://doi:10.26124/BEC:2021-0005 |
» Published online: 2021-Dec-21
Gnaiger Erich (2021-12-31) Bioenerg Commun
Abstract: 2021-12-21 doi:10.26124/bec:2021-0005
Launching and maintaining a scientific journal must be reflected and communicated with a message at a time of excessive numbers of research papers submitted to for-profit publishers of traditional paywall and predatory journals. Bioenergetics Communications BEC supports the UNESCO recommendation on Open Science and DORA. BEC introduces the concept of Living Communications to address the conflict between (R) rapid sharing of new methods and results, (E) efficient prevention of exponentially increasing numbers of publications, and (C) quality control as a time-demanding and expensive instrument to ensure reproducibility. Weekly or monthly printed issues are yesterdayâs concept of prescription journals replaced by commonly and immediately accessible formats in the digital era of Open Access online publishing. The academic publishing ecosystem must be changed to re-allocate publication fees from publishers to science producers.
âą Keywords: authorship, consortia, inflation-attention crisis, living communication, open peer review, open science, publication, repeatability, reproducibility, teams, value-impact
âą Bioblast editor: Gnaiger E
âą O2k-Network Lab: AT Innsbruck Oroboros
Support
- Supported by project NextGen-O2k which has received funding from the European Unionâs Horizon 2020 research and innovation programme under grant agreement No. 859770.
Further notes
- âFor most published papers, âpublicationâ often just signifies âfinal registration into oblivionâ. .. Only 73 of the many thousands of articles ever published by the 187 BMC-affiliated journals had over 10 000 accesses through their journal Web sites in the last yearâ (Young et al 2008).
- Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2:112 pp. https://doi.org/10.26124/bec:2020-0002 - has been accessed 92 758 times (accessed 2022-01-01)
- Gnaiger E et al â MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. https://doi.org/10.26124/bec:2020-0001.v1 - has been accessed 35 423 times (accessed 2022-01-01)
- The empire of Pergamon Press was built by Robert Maxwell and made him a millionaire. "In 1991, to finance his impending purchase of the New York Daily News, Maxwell sold Pergamon to its quiet Dutch competitor Elsevier for ÂŁ440m (ÂŁ919m today)" (Buranyi 2017 Guardian).
- The opportunity is to introduce, demand, and reward a level of rigor and robustness in designing, conducting, reporting, interpreting, validating, and disseminating research that is currently lacking from many areas of biomedical research (Begley 2015 Circ Res).
- Over the recent years, there has been an increasing recognition of the weaknesses that pervade our current system of basic and preclinical research. This has been highlighted empirically in preclinical research by the inability to replicate the majority of findings presented in high-profile journals. The estimates for irreproducibility based on these empirical observations range from 75 % to 90 %. These estimates fit remarkably well with estimates of 85 % for the proportion of biomedical research that is wasted at-large (Begley 2015 Circ Res).
- The number of publishing scientists has grown over the years, with over 15 million scientists publishing â„1 article that was indexed in Scopus in the period 1996â2011. Biomedical research is the most prolific scientific field in this regard. It is practically impossible for even the most knowledgeable expert to maintain direct knowledge of the work done by so many other scientists, even when it comes to his/her core discipline of interest (Begley 2015 Circ Res).
References
Link | View | Reference | Year |
---|---|---|---|
Arese 2021 PLOS ONE | PMID: 32330134 Open Access | Arese Lucini F, Morone F, Tomassone MS, Makse HA (2021) Diversity increases the stability of ecosystems. PLOS ONE 15:e0228692. https://doi.org/10.1371/journal.pone.0228692 | 2021 |
Begley 2015 Circ Res | PMID: 25552691 Open Access | Begley CG, Ioannidis JPA (2015) Reproducibility in science: improving the standard for basic and preclinical research. Circ Res 116:116-26. https://doi.org/10.1161/CIRCRESAHA.114.303819 | 2015 |
Buranyi 2017 Guardian | Open Access | Buranyi S (2017) Is the staggeringly profitable business of scientific publishing bad for science? Guardian 2017-06-27. | 2017 |
Cardoso 2021 BEC MgG | Bioenerg Commun 2021.1. published online 2021-06-30 | Cardoso LHD, Doerrier C, Gnaiger E (2021) Magnesium Green for fluorometric measurement of ATP production does not interfere with mitochondrial respiration. Bioenerg Commun 2021.1. https://doi.org/10.26124/bec:2021-0001 | 2021 |
Day 2020 Res Involv Engagem | PMID: 32161664 Open Access | Day S, Rennie S, Luo D, Tucker JD (2020) Open to the public: paywalls and the public rationale for open access medical research publishing. Res Involv Engagem 6:8. https://doi.org/10.1186/s40900-020-0182-y | 2020 |
Gnaiger 2001 Respir Physiol | Respir Physiol 128:277-97. PMID: 11718759 | Gnaiger E (2001) Bioenergetics at low oxygen: dependence of respiration and phosphorylation on oxygen and adenosine diphosphate supply. https://doi.org/10.1016/S0034-5687(01)00307-3 | 2001 |
Gnaiger 2019 MitoFit Preprints Editorial | MitoFit Preprint Arch 2019.2.v2. Editorial: A vision on preprints
| Gnaiger E (2019) Editorial: A vision on preprints for mitochondrial physiology and bioenergetics. https://doi.org/10.26124/mitofit:190002.v2 | 2019 |
Gnaiger 2020 BEC MitoPathways | published online 2020-12-30
| Gnaiger E (2020) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 5th ed. Bioenerg Commun 2020.2. https://doi.org/10.26124/bec:2020-0002 | 2020 |
BEC 2020.1 doi10.26124bec2020-0001.v1 | Bioenerg Commun 2020.1. published online 2020-05-20 | Gnaiger E et al â MitoEAGLE Task Group (2020) Mitochondrial physiology. Bioenerg Commun 2020.1. https://doi.org/10.26124/bec:2020-0001.v1 | 2020 |
Green 2010 Science | PMID: 20448178 Open Access | Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, PrĂŒfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ćœ, GuĆĄic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, PÀÀbo S (2010) A draft sequence of the Neandertal genome. Science 328:710-22. doi: 10.1126/science.1188021 | 2010 |
Hagve 2020 Tidsskr Nor Legeforen | Open Access | Hagve M (2020) The money behind academic publishing. Tidsskr Nor Legeforen doi: 10.4045/tidsskr.20.0118. | 2020 |
Ioannidis 2014 Lancet | Lancet 383:166-75. PMID: 25552691 Open Access | Ioannidis JPA, Greenland S, Hlatky MA, Khoury MJ, Macleod MR, Moher D, Schulz KF, Tibshirani R (2014) Increasing value and reducing waste in research design, conduct, and analysis. https://doi.org/10.1016/S0140-6736(13)62227-8 | 2014 |
Komlodi 2021 BEC Q | Bioenerg Commun 2021.3. published online 2021-11-11
| KomlĂłdi T, Cardoso LHD, Doerrier C, Moore AL, Rich PR, Gnaiger E (2021) Coupling and pathway control of coenzyme Q redox state and respiration in isolated mitochondria. Bioenerg Commun 2021.3. https://doi.org/10.26124/bec:2021-0003 | 2021 |
Komlodi 2021 BEC AmR-O2 | Bioenerg Commun 2021.4. published online 2021-12-21
| KomlĂłdi T, Sobotka O, Gnaiger E (2021) Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun 2021.4. https://doi.org/10.26124/bec:2021-0004 | 2021 |
Krako Jakovljevic 2021 BEC PD | Bioenerg Commun 2021.2. published online 2021-Oct-06 | Krako Jakovljevic N, Ebanks B, Katyal G, Chakrabarti L, Markovic I, Moisoi N (2021) Mitochondrial homeostasis in cellular models of Parkinsonâs Disease. Bioenerg Commun 2021.2. https://doi.org/10.26124/bec:2021-0002 | 2021 |
Marshall 1967 Penguin Books | Marshall McLuhan Herbert, Fiore Quentin (1967) The Medium is the Massage. Penguin Books 160 pp. | 1967 | |
Paeaebo 2014 Basic Books | Wikipedia youtube | PÀÀbo S (2014) Neanderthal man. In search of lost genomes. Basic Books, New York:275 pp. | 2014 |
Triggle 2017 Drug Dev Res | PMC5324562 Open Access | Triggle Chris R, Triggle David J (2017) From Gutenberg to Open Science: an unfulfilled odyssey. Drug Dev Res 78:3-23. | 2017 |
UNESCO 2021 Open Science | Open Access | UNESCO (2021) Draft recommendation on Open Science. UNESCO 41 C/22. https://unesdoc.unesco.org/ark:/48223/pf0000378841 | 2021 |
Wieser 1974 Mar Biol | Springer | Wieser W, Ott J, Schiemer F, Gnaiger E (1974) An ecophysiological study of some meiofauna species inhabiting a sandy beach at Bermuda. Mar Biol 26:235-48. | 1974 |
Young 2008 PLoS Med | PMID: 18844432 Open Access | Young NS, Ioannidis JPA, Al-Ubaydli O (2008) Why current publication practices may distort science. PLoS Med 5:e201. doi: 10.1371/journal.pmed.0050201 | 2008 |
Further reading
- The following references are not quoted in the text but are relevant in an extended discussion of the topic.
Link | View | Reference | Year |
---|---|---|---|
Amaral 2021 Nature | PMID: 34526702 Open Access | Amaral OB, Neves K (2021) Reproducibility: expect less of the scientific paper. Nature 597:329-31. https://doi.org/10.1038/d41586-021-02486-7 | 2021 |
Baker 2016 Nature | PMID: 27225100 Open Access | Baker M (2016) 1,500 scientists lift the lid on reproducibility. Nature 533:452-4. | 2016 |
Besancon 2021 BMC Med Res Methodol | PMID: 34090351 Open Access | Besançon L, Peiffer-Smadja N, Segalas C, Jiang H, Masuzzo P, Smout C, Billy E, Deforet M, Leyrat C (2021) Open science saves lives: lessons from the COVID-19 pandemic. BMC Med Res Methodol 21:117. doi: 10.1186/s12874-021-01304-y | 2021 |
Besancon 2020 Res Integr Peer Rev | PMID: 32607252 Open Access | Besançon L, Rönnberg N, Löwgren J, Tennant JP, Cooper M (2020) Open up: a survey on open and non-anonymized peer reviewing. Res Integr Peer Rev 5:8. doi: 10.1186/s41073-020-00094-z | 2020 |
Carpenter 2014 Acad Emerg Med | PMID: 25308141 Open Access | Carpenter CR, Cone DC, Sarli CC (2014) Using publication metrics to highlight academic productivity and research impact. Acad Emerg Med 21:1160-72. | 2014 |
Fox 2021 Proc Biol Sci | PMID: 34702079 Open Access | Fox CW (2021) Which peer reviewers voluntarily reveal their identity to authors? Insights into the consequences of open-identities peer review. Proc Biol Sci 288(1961):20211399. doi: 10.1098/rspb.2021.1399 | 2021 |
Ioannidis 2005 PLoS Med | PMID: 16060722 Open Access | Ioannidis JPA (2005) Why most published research findings are false. PLoS Med 2:e124. https://doi.org/10.1371/journal.pmed.0020124 | 2005 |
Kelly 2013 First Monday | Open Access | Kelly AR, Autry MK (2013) Access, accommodation, and science: knowledge in an âopenâ world. First Monday 18. https://doi.org/10.5210/fm.v18i6.4341. | 2013 |
Rodgers 2021 Elife | PMID: 34874010 Open Access | Rodgers P, Collings A (2021) What have we learned? Elife 10:e75830. doi: 10.7554/eLife.75830 | 2021 |
Ross-Hellauer 2017 F1000Res | PMID: 28580134 Open Access | Ross-Hellauer T (2017) What is open peer review? A systematic review. F1000Res 6:588. doi: 10.12688/f1000research.11369.2 | 2017 |
Ross-Hellauer 2019 Res Integr Peer Rev | PMID: 30858990 Open Access | Ross-Hellauer T, Görögh E (2019) Guidelines for open peer review implementation. Res Integr Peer Rev 4:4. doi: 10.1186/s41073-019-0063-9 | 2019 |
Van Noorden 2013 Nature | Nature Open Access | Van Noorden R (2013) Open access: the true cost of science publishing. Nature 495:426â9. | 2013 |
Wells 2004 J Cell Biol | PMID: 15210725 Open Access | Wells WA (2004) Me write pretty one day: how to write a good scientific paper. J Cell Biol 165:757-8. doi: 10.1083/jcb.200403137. | 2004 |
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