O2k-Fluo LED2-Module: Difference between revisions

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{{Template:Scope of fluorescence application}}
{{Template:Scope of fluorescence application}}


== Select LED Fluo-Sensors ==
{{Template:Select fluorescence sensor}}


== O2k signal and output ==
== Fluorescence dyes and settings ==
::::# [[O2k signals and output#Signal of the O2k-Core and add-on modules |O2k signal]]: The O2k-Fluo LED2-Module is operated through the amperometric (Amp)-Channel of the O2k.
{{Template:Fluorescence dyes and settings}}
::::# [[O2k signals and output#O2k output |O2k output]]: type I, II, or III, or combinations.


== Mounting a filter cap ==
:::* ''See'': [[Filter-Cap#Mounting_a_Filter-Cap|Mounting a filter cap]]


== Stoppers ==
{{Template:Stoppers for fluorometry}}


 
== Connect LED Fluo-Sensor to O2k ==
== O2k-Manual: O2k-Fluo LED2-Module (for O2k series D-G)==
 
=== Setup of the O2k-Fluo LED2-Module ===
:::# [[Fluorescence-Control_Unit#Setup_of_the_O2k-Fluorescence_LED2-Module|Setup of the O2k-Fluo LED2-Module]]
:::# [[Fluorescence-Control_Unit#Setup_of_the_O2k-Fluorescence_LED2-Module|Setup of the O2k-Fluo LED2-Module]]
:::# [[Fluorescence-Sensor#Select_the_Fluorescence-Sensors|Selecting a Fluorescence Sensor]]'''
:::# [[Filter-Cap#Mounting_a_Filter-Cap|Mounting a Filter-Cap]]
:::# [[Fluorescence-Sensor#Connect_Fluorescence-Sensor_to_O2k|Connect Fluorescence-Sensor to O2k-Main unit]]
:::# [[Fluorescence-Control_Unit#Power_on|Power on]]
:::# [[Fluorescence-Control_Unit#Power_on|Power on]]


== Electronic settings and LED intensity ==
:::* ''See'': [[Fluorescence-Control_Unit#O2k-Guide|Electronic settings and LED intensity]]


=== LED-intensity and amplification ===
== O2k signal and output ==
:::# [[Fluorescence-Control_Unit#Control_of_LED-intensity|LED-intensity]]
::::# [[O2k signals and output#Signal of the O2k-Core and add-on modules |O2k signal]]: The O2k-Fluo LED2-Module is operated through the amperometric (Amp)-Channel of the O2k.
:::# [[Fluorescence-Control_Unit#Gain|Amplification]]
::::# [[O2k signals and output#O2k output |O2k output]]: type I, II, or III, or combinations.
 
::::The light intensity of the LED ([[Fluorescence-Control_Unit#Control_of_LED-intensity|LED-intensity]]) and the signal amplification ([[Fluorescence-Control_Unit#Gain|Gain]]) can be adjusted in a wide range. The table suggests initial values, which can be optimised for specific applications.
::::* The settings depend on the concentration of the fluorophore, which vary between different applications. Therefore, only recommendations for specific fluorophore concentrations are given. In the Amplex®  UltraRed assay the fluorophore is formed during the experiment.
::::* The recommendations apply to experiments at 37 °C. The Fluorescence intensity increases strongly at lower temperatures. Then the light intensity is reduced to avoid off-scale signals.
 
 
== Fluorophores ==


{| class="wikitable"
== DatLab ==
|-
! Application !!Sensor!! Filter set !! O2k output !! Light intensity (Amp polarization voltage)  !! Gain !! Comment
|-
| [[Amplex UltraRed|Amplex® UltraRed]]||[[Fluorescence-Sensor Green]] || [[ Filter Set AmR| AmR]] || [[O2k_signal_and_output|Type II]] || 100 - 500 || 1000 || at c(AmR) = 10 µM
|-
| [[TMRM]]||[[Fluorescence-Sensor Green]] || [[ Filter Set AmR| AmR]] || [[O2k_signal_and_output|Type III]] || 200 - 500|| 1000 || at c(TMRM) = 2 µM
|-
| [[Safranin]] ||[[Fluorescence-Sensor Blue]]|| [[Filter Set Saf|Saf]] || [[O2k_signal_and_output| Type III]] || 100 - 200  || 1000 || at c(safranin) = 2 µM
|-
| [[Magnesium green|Magnesium Green™]]||[[Fluorescence-Sensor Blue]]|| [[Filter Set MgG / CaG| MgG / CaG]] || [[O2k_signal_and_output| Type I and II]] || 100 - 500|| 1000 || at c(Mg Green) = 2 µM
|-
| [[Calcium green|Calcium Green™]]||[[Fluorescence-Sensor Blue]]|| [[Filter Set MgG / CaG| MgG / CaG]] || [[O2k_signal_and_output|Type I]] ||300 - 500||  1000 ||at c(Ca Green) = 2 µM
|}
::::* In the O2k-LED2-Module (Series D-G) polarization voltage is used, while in the O2k-Fluo Smart Module (Series H-I) fluorescence intensity. To use the same setting in the O2k-Fluo LED2-Module as in the O2k-Fluo Smart-Module use the following Excel sheet:
{| class="wikitable" style="margin: auto;"
|-
|style="border: 1px solid #DFDFDF;"|[[image:Download2.png|25px|link=http://wiki.oroboros.at/images/b/b3/Calculation_sheet_Fluo-Sensors.xlsx]]  [http://wiki.oroboros.at/images/b/b3/Calculation_sheet_Fluo-Sensors.xlsx Download the EXCEL calculation-sheet to adjust fluorescence intensity]  [[image:Download2.png|25px|right|link=http://wiki.oroboros.at/images/b/b3/Calculation_sheet_Fluo-Sensors.xlsx]]
|-
|}
 
 
 
 
=== The fluorescence signal  ===
:::# [[O2k signals and output#Signal of the O2k-Core and add-on modules |O2k signal]]: The [[O2k-Fluo LED2-Module]] is operated through the amperometric (Amp)-Channel of the O2k, with electric current (ampere  [Amp]) as the primary signal.
:::# [[O2k signals and output#O2k output |O2k output]]: type I, II, or III, or combinations.


[[Image:DL7graph_select_plots_amp.jpg|thumb|250px|alt=Check Amp raw signal form Graph/Select Plots to display the fluorometric signal| Graph / Select plots‎ ]]'''Graph layout''': Three plots are available in DatLab based on the recorded signal: '''Amp Raw Signal''', '''Amp Calibrated''', and '''Amp Slope'''<nowiki>. These plots can be selected from the drop-down lines and displayed with their check boxes either on the Y1 or Y2 [Graph layout / Select Plots].</nowiki>  
[[Image:DL7graph_select_plots_amp.jpg|thumb|250px|alt=Check Amp raw signal form Graph/Select Plots to display the fluorometric signal| Graph / Select plots‎ ]]'''Graph layout''': Three plots are available in DatLab based on the recorded signal: '''Amp Raw Signal''', '''Amp Calibrated''', and '''Amp Slope'''<nowiki>. These plots can be selected from the drop-down lines and displayed with their check boxes either on the Y1 or Y2 [Graph layout / Select Plots].</nowiki>  
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::::* [[Titration-Injection microPump |TIP2k]]: Our tests indicated that the fluorometric signal is not affected by the TIP2k needle inserted into the 2-mL O2k-chamber.
::::* [[Titration-Injection microPump |TIP2k]]: Our tests indicated that the fluorometric signal is not affected by the TIP2k needle inserted into the 2-mL O2k-chamber.


== O2k-Fluorometry Workshops ==
== Troubleshooting ==
::::* [[Oroboros_Events#Next_O2k-Workshops|Oroboros O2k-Workshops]]
:::* ''-See'': [[Defective fluorescence module]]
 
== References ==
 
[[Image:O2k-Publications.jpg|left|116px|link=O2k-Publications: Topics|O2k-Publications in the MiPMap]]
[[Image:O2k-Publications.jpg|left|116px|link=O2k-Publications: Topics|O2k-Publications in the MiPMap]]
<br />
<br />
<div class="toccolours mw-collapsible mw-collapsed">
<div class="toccolours mw-collapsible mw-collapsed">
::: <span style="font-size:105%; color:##424242">'''» References'''</span>
::: <span style="font-size:105%; color:##424242">'''» O2k-Publications'''</span>
<div class="mw-collapsible-content">
<div class="mw-collapsible-content">
'''»[[O2k-Publications: Topics]]'''
'''»[[O2k-Publications: Topics]]'''
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== Troubleshooting ==
::: ''-See'': [[Defective fluorescence module]]
== Next step ==
::::* [[O2k-FluoRespirometer]]
::::* [[O2k-Innovation description|O2k-Innovation]]
== Additional resources ==
» [[O2k-Catalogue: O2k-Modules| O2k-Modules]]<br>
» [[MiPNet17.05 O2k-Fluo LED2-Module|O2k-Fluo Manual]]<br>
»[[O2k-Demo_experiments#O2k-Demo_O2k-MultiSensor |O2k-Demo experiments]]<br>
»[[Fluorescence-Sensor]]<br>


==Additional resources==
::::» [[O2k-FluoRespirometer]]
::::» [[MiPNet22.11 O2k-FluoRespirometer manual]]
::::» [[MiPNet17.05 O2k-Fluo LED2-Module|O2k-Fluo Manual]]<br>
::::» [[O2k-Demo_experiments#O2k-Demo_O2k-MultiSensor |O2k-Demo experiments]]<br>
::::» [[O2k-Catalogue:_O2k-Modules|O2k-Modules]]<br>


[[File:Questions.jpg|left|40px]]
[[File:Questions.jpg|left|40px]]
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{{MitoPedia methods
{{MitoPedia methods
|mitopedia method=Fluorometry
|mitopedia method=Fluorometry

Latest revision as of 07:02, 29 March 2024


                  


O2k-Open Support

O2k-Fluo LED2-Module



Template NextGen-O2k.jpg


MitoPedia O2k and high-resolution respirometry: O2k-Open Support 



Description

[[Description::

Fluorescence-Control Unit lettered.jpg

The O2k-Fluo LED2-Module is a component of the O2k-Fluorometer (O2k-Series D to G). It is an amperometric add-on module to the O2k-Core (O2k-Series D to G), adding a new dimension to high-resolution respirometry. Optical sensors are inserted through the front window of the O2k-glass chambers, for measurement of hydrogen peroxide production (Amplex® UltraRed), ATP production (Magnesium Green™), mt-membrane potential (Safranin, TMRM, Rhodamine 123), Ca2+ (Calcium Green™), and numerous other applications open for O2k-user innovation.]]


Reference: [[Info::Product details and purchase information]]


Scope of application

The scope of applications is defined by the excitation wavelengths of the Fluorescence-Sensor Green and Fluorescence-Sensor Blue and the selection of emission filters.
The O2k-Fluo LED2-Module (O2k series D to G) and O2k-Fluo Smart-Module (O2k series H and higher) are designed for measurements performed on samples placed in a stirred and temperature-controlled chamber. Fluorometric protocols based on measurements in cuvettes of various fluorometers can be used with the O2k-Fluo Modules, and extended by simultaneous measurement of respiration and monitoring or regulation of oxygen concentration. The excitation and emission wavelengths of the fluorophore must be suitable for the filters and sensors of the O2k Fluo-Modules (see table below in the section "Fluorescence dyes and settings")
The fluorescence modules are not designed to fulfill the functions of fluorescence microscopes or flow cytometers.

Select LED Fluo-Sensors

Switching between different excitation wavelengths and filters is achieved by simply exchanging the Fluo-Sensors. Two types of optical sensors are supplied with different LEDs for fluorescence excitation, and the effective spectra of the LEDs are modified by filters.
Select the Fluo-Sensor and filter set from the table below in the section "Fluorescence dyes and settings". Each Fluo-Sensor is delivered with a mounted filter set:
  1. Fluorescence-Sensor Green and Smart Fluo-Sensor Green: 525 nm (dominant wavelength). The installed Filter-Cap is ready for H2O2 measurement with Amplex® UltraRed or for measurements of mt-membrane potential with TMRM.
  2. Fluorescence-Sensor Blue and Smart Fluo-Sensor Blue: 465 nm (dominant wavelength). The installed Filter-Cap is ready for measurements of mt-membrane potential with safranin or Rhodamine 123. A different filter is used for measurement with Magnesium Green™ or Calcium Green™.

PlayVideo.jpg Exchanging a filter set of the Smart Fluo-Sensor

Fluorescence dyes and settings

The light intensity of the LED (LED-intensity) and the signal amplification (Gain) can be adjusted in a wide range. The table suggests initial values, which can be optimised for specific applications.
  • The settings depend on the concentration of the fluorophore, which vary between different applications. Therefore, only recommendations for specific fluorophore concentrations are given. In the Amplex® UltraRed assay the fluorophore is formed during the experiment.
  • The recommendations apply to experiments at 37 °C. The Fluorescence intensity increases strongly at lower temperatures. Then the light intensity is reduced to avoid off-scale signals.
Application Sensor Filter set O2k output Light intensity (Amp polarization voltage) Gain Comment
AmplexTM UltraRed Fluorescence-Sensor Green or Smart Fluo-Sensor Green AmR Type II 100 - 500 1000 at c(AmR) = 10 µM
TMRM Fluorescence-Sensor Green or Smart Fluo-Sensor Green AmR Type III 100 - 500 1000 at c(TMRM) = 2 µM
Safranin Fluorescence-Sensor Blue or Smart Fluo-Sensor Blue Saf Type III 100 - 250 1000 at c(safranin) = 2 µM
Rhodamine 123 Fluorescence-Sensor Blue or Smart Fluo-Sensor Blue Saf Type III 100 - 250 1000 at c(Rh123) = 1 µM
Magnesium Green™ Fluorescence-Sensor Blue or Smart Fluo-Sensor Blue MgG / CaG Type I and II 100 - 500 1000 at c(Mg Green) = 2 µM
Calcium Green™ Fluorescence-Sensor Blue or Smart Fluo-Sensor Blue MgG / CaG Type I 300 - 500 1000 at c(Ca Green) = 2 µM

In the O2k-LED2-Module (Series D-G) polarization voltage is used, while in the O2k-Fluo Smart Module (Series H-I) fluorescence intensity. To use the same setting in the O2k-Fluo LED2-Module as in the O2k-Fluo Smart-Module use the following Excel sheet:

Download2.png Download the EXCEL calculation-sheet to adjust fluorescence intensity
Download2.png

Mounting a filter cap

Stoppers

Use only black PEEK stoppers in conjunction with fluorometric measurements. If necessary, replace the previous white PVDF stoppers. The black stoppers can be used for all HRR applications. See MiPNet22.11 O2k-FluoRespirometer manual for calibration of the 2-mL O2k-chamber volume, which is identical for PEEK and PVDF stoppers.

Connect LED Fluo-Sensor to O2k

  1. Setup of the O2k-Fluo LED2-Module
  2. Power on

Electronic settings and LED intensity

O2k signal and output

  1. O2k signal: The O2k-Fluo LED2-Module is operated through the amperometric (Amp)-Channel of the O2k.
  2. O2k output: type I, II, or III, or combinations.

DatLab

Check Amp raw signal form Graph/Select Plots to display the fluorometric signal
Graph / Select plots‎

Graph layout: Three plots are available in DatLab based on the recorded signal: Amp Raw Signal, Amp Calibrated, and Amp Slope. These plots can be selected from the drop-down lines and displayed with their check boxes either on the Y1 or Y2 [Graph layout / Select Plots].


Amp Raw Signal displays the raw voltage (including amplification) as recorded by the O2k at a given gain setting.
Amp Calibrated is the signal after calibration with the parameters set in the O2k-MultiSensor Calibration window.
Amp slope is the time derivative of the calibrated signal, multiplied by 1000, in units [mV(conc. Unit during calibration)/s], so if the signal was calibrated in µM [nmol/ml] the unit of the slope is pmol/(s ml). To obtain the slope of the raw signal check the appropriate box in the calibration window (DatLab 5.1.0.130 and above).
Graphs can be generated to display oxygen and fluorescence data, or several graphs can be added to display oxygen and fluorescence data separately. Layout templates are provided, which can be modified and saved as appropriate. All graph settings can be saved as user-defined layouts, see MiPNet19.01C DatLab Guide.


O2k-Fluorometry and the TIP2k

  • TIP2k: Our tests indicated that the fluorometric signal is not affected by the TIP2k needle inserted into the 2-mL O2k-chamber.

Troubleshooting

References

O2k-Publications in the MiPMap


» O2k-Publications

»O2k-Publications: Topics

Sort in ascending/descending order by a click on one of the small symbols in squares below.
Default sorting: chronological. Empty fields appear first in ascending order. 

{{#ask: Instrument and method::Oxygraph-2k Instrument and method::O2k-Fluorometer |?Was published in year |?Has title |?Mammal and model=Organism |?Tissue and cell=Tissue;cell |format=broadtable |limit=5000 |offset=0 |sort=Was published in year |order=descending }}




» O2k-Publications: O2k-Fluorometry - Abstracts
Sort in ascending/descending order by a click on one of the small symbols in squares below.

{{#ask: Instrument and method::Oxygraph-2k Instrument and method::O2k-Fluorometer |?Was submitted in year |?Has title |?Mammal and model=Organism |?Tissue and cell=Tissue;cell |format=broadtable |limit=5000 |offset=0 |sort=Was submitted in year |order=descending }}


Additional resources

» O2k-FluoRespirometer
» MiPNet22.11 O2k-FluoRespirometer manual
» O2k-Fluo Manual
» O2k-Demo experiments
» O2k-Modules
Questions.jpg





MitoPedia methods: Fluorometry 


MitoPedia O2k and high-resolution respirometry: O2k hardware, O2k-Open Support, O2k-FluoRespirometry 

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